NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
369.0 |
| Mean read quality |
7.1 |
| Median read length |
342.0 |
| Median read quality |
8.0 |
| Number of reads |
43,184.0 |
| Read length N50 |
365.0 |
| STDEV read length |
129.9 |
| Total bases |
15,933,613.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
41779 (96.7%) 15.6Mb |
| >Q7 |
29742 (68.9%) 10.5Mb |
| >Q10 |
2500 (5.8%) 0.8Mb |
| >Q12 |
3 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.2 (572) |
| 2 |
12.0 (599) |
| 3 |
12.0 (527) |
| 4 |
11.9 (333) |
| 5 |
11.9 (890) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
2155 (6.3) |
| 2 |
1896 (5.9) |
| 3 |
1767 (6.6) |
| 4 |
1703 (6.2) |
| 5 |
1658 (6.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot