NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
390.7 |
| Mean read quality |
6.9 |
| Median read length |
366.0 |
| Median read quality |
7.6 |
| Number of reads |
298,396.0 |
| Read length N50 |
387.0 |
| STDEV read length |
126.0 |
| Total bases |
116,576,423.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
291559 (97.7%) 114.7Mb |
| >Q7 |
194966 (65.3%) 73.1Mb |
| >Q10 |
8864 (3.0%) 3.0Mb |
| >Q12 |
3 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.1 (299) |
| 2 |
12.1 (362) |
| 3 |
12.0 (624) |
| 4 |
12.0 (332) |
| 5 |
11.9 (640) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
2636 (5.9) |
| 2 |
2467 (7.0) |
| 3 |
2235 (4.9) |
| 4 |
1960 (5.3) |
| 5 |
1927 (6.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot