NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
310.3 |
| Mean read quality |
6.2 |
| Median read length |
295.0 |
| Median read quality |
6.8 |
| Number of reads |
257,685.0 |
| Read length N50 |
354.0 |
| STDEV read length |
165.1 |
| Total bases |
79,967,708.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
245022 (95.1%) 77.2Mb |
| >Q7 |
114038 (44.3%) 35.8Mb |
| >Q10 |
653 (0.3%) 0.2Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
11.9 (379) |
| 2 |
11.8 (427) |
| 3 |
11.6 (285) |
| 4 |
11.4 (291) |
| 5 |
11.3 (262) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8925 (3.4) |
| 2 |
8104 (5.2) |
| 3 |
4304 (3.1) |
| 4 |
3643 (3.5) |
| 5 |
2601 (4.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot