NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
385.1 |
| Mean read quality |
7.4 |
| Median read length |
369.0 |
| Median read quality |
8.3 |
| Number of reads |
99,533.0 |
| Read length N50 |
386.0 |
| STDEV read length |
105.5 |
| Total bases |
38,327,594.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
98122 (98.6%) 37.9Mb |
| >Q7 |
77426 (77.8%) 29.2Mb |
| >Q10 |
8794 (8.8%) 3.3Mb |
| >Q12 |
19 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.0 (369) |
| 2 |
12.7 (393) |
| 3 |
12.5 (420) |
| 4 |
12.4 (485) |
| 5 |
12.3 (315) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
2301 (5.2) |
| 2 |
1785 (6.9) |
| 3 |
1735 (6.0) |
| 4 |
1622 (7.7) |
| 5 |
1597 (7.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot