NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
282.8 |
| Mean read quality |
3.7 |
| Median read length |
307.0 |
| Median read quality |
4.7 |
| Number of reads |
104,724.0 |
| Read length N50 |
357.0 |
| STDEV read length |
204.9 |
| Total bases |
29,619,502.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
47962 (45.8%) 17.4Mb |
| >Q7 |
23157 (22.1%) 7.9Mb |
| >Q10 |
525 (0.5%) 0.2Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
11.5 (376) |
| 2 |
11.5 (327) |
| 3 |
11.4 (658) |
| 4 |
11.4 (350) |
| 5 |
11.4 (342) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9930 (1.5) |
| 2 |
9772 (2.8) |
| 3 |
9389 (1.3) |
| 4 |
9185 (2.5) |
| 5 |
9131 (1.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot