NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
347.8 |
| Mean read quality |
7.3 |
| Median read length |
331.0 |
| Median read quality |
8.2 |
| Number of reads |
215,784.0 |
| Read length N50 |
343.0 |
| STDEV read length |
89.9 |
| Total bases |
75,057,234.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
209930 (97.3%) 73.5Mb |
| >Q7 |
163056 (75.6%) 56.3Mb |
| >Q10 |
18668 (8.7%) 6.5Mb |
| >Q12 |
22 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.6 (213) |
| 2 |
12.5 (363) |
| 3 |
12.4 (316) |
| 4 |
12.4 (390) |
| 5 |
12.4 (351) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6912 (3.4) |
| 2 |
3785 (4.0) |
| 3 |
2593 (5.5) |
| 4 |
1912 (5.0) |
| 5 |
1801 (3.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot