NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
328.7 |
| Mean read quality |
6.6 |
| Median read length |
331.0 |
| Median read quality |
7.3 |
| Number of reads |
340,165.0 |
| Read length N50 |
359.0 |
| STDEV read length |
123.3 |
| Total bases |
111,795,297.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
330747 (97.2%) 109.4Mb |
| >Q7 |
199383 (58.6%) 64.9Mb |
| >Q10 |
3272 (1.0%) 1.1Mb |
| >Q12 |
1 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.1 (300) |
| 2 |
11.9 (382) |
| 3 |
11.8 (328) |
| 4 |
11.8 (348) |
| 5 |
11.7 (335) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
4724 (4.6) |
| 2 |
2211 (4.5) |
| 3 |
1993 (6.1) |
| 4 |
1929 (4.8) |
| 5 |
1772 (4.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot