NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,959.6 |
| Mean read quality |
9.6 |
| Median read length |
2,942.0 |
| Median read quality |
10.4 |
| Number of reads |
6,363.0 |
| Read length N50 |
3,487.0 |
| STDEV read length |
1,282.7 |
| Total bases |
18,831,948.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
6363 (100.0%) 18.8Mb |
| >Q7 |
6359 (99.9%) 18.8Mb |
| >Q10 |
4120 (64.7%) 12.7Mb |
| >Q12 |
15 (0.2%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.3 (3218) |
| 2 |
12.2 (3238) |
| 3 |
12.2 (4039) |
| 4 |
12.1 (542) |
| 5 |
12.1 (1434) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8992 (9.9) |
| 2 |
7549 (9.7) |
| 3 |
7256 (10.7) |
| 4 |
7007 (10.5) |
| 5 |
6989 (11.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot