NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,673.9 |
| Mean read quality |
9.9 |
| Median read length |
3,692.0 |
| Median read quality |
10.8 |
| Number of reads |
13,468.0 |
| Read length N50 |
4,055.0 |
| STDEV read length |
1,209.3 |
| Total bases |
49,479,966.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
13468 (100.0%) 49.5Mb |
| >Q7 |
13466 (100.0%) 49.5Mb |
| >Q10 |
10320 (76.6%) 38.6Mb |
| >Q12 |
239 (1.8%) 0.9Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.7 (3579) |
| 2 |
12.6 (4416) |
| 3 |
12.6 (2804) |
| 4 |
12.6 (3021) |
| 5 |
12.6 (3590) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11596 (10.8) |
| 2 |
10699 (11.2) |
| 3 |
10355 (10.9) |
| 4 |
9928 (10.7) |
| 5 |
9359 (9.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot