NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,092.5 |
| Mean read quality |
8.6 |
| Median read length |
2,017.0 |
| Median read quality |
9.2 |
| Number of reads |
7,413.0 |
| Read length N50 |
2,310.0 |
| STDEV read length |
829.7 |
| Total bases |
15,511,498.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
7413 (100.0%) 15.5Mb |
| >Q7 |
7407 (99.9%) 15.5Mb |
| >Q10 |
1671 (22.5%) 3.6Mb |
| >Q12 |
2 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.5 (2314) |
| 2 |
12.3 (1647) |
| 3 |
11.9 (1703) |
| 4 |
11.9 (2466) |
| 5 |
11.8 (3165) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6903 (7.9) |
| 2 |
5848 (10.6) |
| 3 |
5810 (9.3) |
| 4 |
5530 (9.2) |
| 5 |
5518 (9.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot