NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,191.0 |
| Mean read quality |
9.9 |
| Median read length |
3,208.0 |
| Median read quality |
10.7 |
| Number of reads |
70,930.0 |
| Read length N50 |
3,533.0 |
| STDEV read length |
1,078.8 |
| Total bases |
226,337,381.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
70930 (100.0%) 226.3Mb |
| >Q7 |
70916 (100.0%) 226.3Mb |
| >Q10 |
52799 (74.4%) 172.0Mb |
| >Q12 |
1089 (1.5%) 3.6Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.2 (3062) |
| 2 |
13.1 (4210) |
| 3 |
13.0 (1657) |
| 4 |
12.9 (2698) |
| 5 |
12.9 (2825) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11484 (10.4) |
| 2 |
11221 (10.3) |
| 3 |
10393 (11.2) |
| 4 |
10010 (10.7) |
| 5 |
9428 (10.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot