NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,407.8 |
| Mean read quality |
9.9 |
| Median read length |
2,329.0 |
| Median read quality |
10.7 |
| Number of reads |
170,939.0 |
| Read length N50 |
2,869.0 |
| STDEV read length |
1,139.4 |
| Total bases |
411,589,742.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
170939 (100.0%) 411.6Mb |
| >Q7 |
170858 (100.0%) 411.5Mb |
| >Q10 |
119198 (69.7%) 289.5Mb |
| >Q12 |
24429 (14.3%) 54.7Mb |
| >Q15 |
21 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.1 (102) |
| 2 |
16.3 (91) |
| 3 |
15.7 (300) |
| 4 |
15.7 (162) |
| 5 |
15.7 (143) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11308 (8.4) |
| 2 |
10931 (9.0) |
| 3 |
10827 (10.7) |
| 4 |
10536 (8.8) |
| 5 |
10478 (8.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot