NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,304.9 |
| Mean read quality |
10.0 |
| Median read length |
2,275.0 |
| Median read quality |
10.8 |
| Number of reads |
144,000.0 |
| Read length N50 |
2,550.0 |
| STDEV read length |
849.1 |
| Total bases |
331,908,982.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
144000 (100.0%) 331.9Mb |
| >Q7 |
143943 (100.0%) 331.8Mb |
| >Q10 |
102717 (71.3%) 238.2Mb |
| >Q12 |
24159 (16.8%) 54.2Mb |
| >Q15 |
8 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.5 (76) |
| 2 |
16.4 (152) |
| 3 |
16.2 (1130) |
| 4 |
15.8 (461) |
| 5 |
15.6 (421) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9841 (10.2) |
| 2 |
9760 (10.9) |
| 3 |
9232 (10.6) |
| 4 |
8556 (11.0) |
| 5 |
8343 (10.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot