NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,551.0 |
| Mean read quality |
9.8 |
| Median read length |
1,522.0 |
| Median read quality |
10.6 |
| Number of reads |
269,348.0 |
| Read length N50 |
1,722.0 |
| STDEV read length |
617.3 |
| Total bases |
417,745,320.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
269348 (100.0%) 417.7Mb |
| >Q7 |
269161 (99.9%) 417.6Mb |
| >Q10 |
180929 (67.2%) 282.2Mb |
| >Q12 |
31150 (11.6%) 46.1Mb |
| >Q15 |
24 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.7 (154) |
| 2 |
15.7 (291) |
| 3 |
15.5 (372) |
| 4 |
15.5 (74) |
| 5 |
15.5 (534) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8229 (10.1) |
| 2 |
7974 (10.8) |
| 3 |
7363 (11.0) |
| 4 |
7339 (10.5) |
| 5 |
6939 (11.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot