NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,171.3 |
| Mean read quality |
9.8 |
| Median read length |
2,152.0 |
| Median read quality |
10.7 |
| Number of reads |
74,803.0 |
| Read length N50 |
2,451.0 |
| STDEV read length |
871.6 |
| Total bases |
162,420,731.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
74803 (100.0%) 162.4Mb |
| >Q7 |
74699 (99.9%) 162.4Mb |
| >Q10 |
50685 (67.8%) 113.2Mb |
| >Q12 |
10690 (14.3%) 23.4Mb |
| >Q15 |
11 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.1 (29) |
| 2 |
17.6 (175) |
| 3 |
16.8 (82) |
| 4 |
16.8 (69) |
| 5 |
16.3 (53) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9406 (9.2) |
| 2 |
9289 (10.6) |
| 3 |
8705 (10.6) |
| 4 |
8508 (10.7) |
| 5 |
8358 (11.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot