NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,270.8 |
| Mean read quality |
9.9 |
| Median read length |
2,197.0 |
| Median read quality |
10.8 |
| Number of reads |
228,633.0 |
| Read length N50 |
2,539.0 |
| STDEV read length |
918.4 |
| Total bases |
519,184,353.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
228633 (100.0%) 519.2Mb |
| >Q7 |
228547 (100.0%) 519.1Mb |
| >Q10 |
160851 (70.4%) 367.2Mb |
| >Q12 |
39656 (17.3%) 87.0Mb |
| >Q15 |
20 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.4 (111) |
| 2 |
16.2 (128) |
| 3 |
16.2 (129) |
| 4 |
16.2 (105) |
| 5 |
16.1 (968) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11209 (8.4) |
| 2 |
10570 (11.8) |
| 3 |
10476 (9.8) |
| 4 |
10380 (9.1) |
| 5 |
10338 (11.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot