NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,372.5 |
| Mean read quality |
9.9 |
| Median read length |
2,311.0 |
| Median read quality |
10.7 |
| Number of reads |
118,664.0 |
| Read length N50 |
2,587.0 |
| STDEV read length |
850.8 |
| Total bases |
281,528,568.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
118664 (100.0%) 281.5Mb |
| >Q7 |
118646 (100.0%) 281.5Mb |
| >Q10 |
91210 (76.9%) 220.0Mb |
| >Q12 |
1653 (1.4%) 3.9Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.1 (3461) |
| 2 |
12.9 (1102) |
| 3 |
12.9 (2636) |
| 4 |
12.9 (2325) |
| 5 |
12.9 (1929) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9543 (11.7) |
| 2 |
9344 (10.9) |
| 3 |
9091 (10.2) |
| 4 |
8978 (10.0) |
| 5 |
8956 (10.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot