NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,479.8 |
| Mean read quality |
9.8 |
| Median read length |
1,425.0 |
| Median read quality |
10.7 |
| Number of reads |
321,250.0 |
| Read length N50 |
1,592.0 |
| STDEV read length |
559.2 |
| Total bases |
475,397,506.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
321249 (100.0%) 475.4Mb |
| >Q7 |
320978 (99.9%) 475.1Mb |
| >Q10 |
222727 (69.3%) 332.2Mb |
| >Q12 |
33997 (10.6%) 48.6Mb |
| >Q15 |
12 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.0 (565) |
| 2 |
15.8 (42) |
| 3 |
15.7 (254) |
| 4 |
15.6 (438) |
| 5 |
15.6 (162) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8620 (8.1) |
| 2 |
8071 (9.2) |
| 3 |
7057 (9.3) |
| 4 |
7025 (8.7) |
| 5 |
6748 (9.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot