NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,155.9 |
| Mean read quality |
9.5 |
| Median read length |
2,114.0 |
| Median read quality |
10.2 |
| Number of reads |
111,552.0 |
| Read length N50 |
2,395.0 |
| STDEV read length |
828.8 |
| Total bases |
240,498,183.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
111552 (100.0%) 240.5Mb |
| >Q7 |
111483 (99.9%) 240.4Mb |
| >Q10 |
63794 (57.2%) 139.2Mb |
| >Q12 |
5558 (5.0%) 11.1Mb |
| >Q15 |
1 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.4 (194) |
| 2 |
15.0 (253) |
| 3 |
14.9 (111) |
| 4 |
14.7 (65) |
| 5 |
14.6 (1101) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8315 (8.2) |
| 2 |
8170 (9.1) |
| 3 |
8045 (10.7) |
| 4 |
7931 (11.6) |
| 5 |
7762 (9.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot