NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,169.4 |
| Mean read quality |
9.6 |
| Median read length |
3,108.5 |
| Median read quality |
10.4 |
| Number of reads |
2,982.0 |
| Read length N50 |
3,459.0 |
| STDEV read length |
1,125.3 |
| Total bases |
9,451,066.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
2982 (100.0%) 9.5Mb |
| >Q7 |
2981 (100.0%) 9.4Mb |
| >Q10 |
1981 (66.4%) 6.5Mb |
| >Q12 |
14 (0.5%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.5 (700) |
| 2 |
12.4 (4280) |
| 3 |
12.3 (4356) |
| 4 |
12.2 (2602) |
| 5 |
12.2 (3980) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8786 (8.8) |
| 2 |
8113 (11.1) |
| 3 |
7812 (10.8) |
| 4 |
7561 (10.9) |
| 5 |
7437 (10.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot