NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,316.4 |
| Mean read quality |
9.8 |
| Median read length |
2,255.0 |
| Median read quality |
10.6 |
| Number of reads |
24,494.0 |
| Read length N50 |
2,559.0 |
| STDEV read length |
887.6 |
| Total bases |
56,738,073.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
24494 (100.0%) 56.7Mb |
| >Q7 |
24491 (100.0%) 56.7Mb |
| >Q10 |
18249 (74.5%) 43.4Mb |
| >Q12 |
415 (1.7%) 1.1Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.0 (2011) |
| 2 |
12.8 (3217) |
| 3 |
12.7 (1590) |
| 4 |
12.7 (2178) |
| 5 |
12.7 (2327) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9672 (8.9) |
| 2 |
9590 (11.0) |
| 3 |
8584 (11.3) |
| 4 |
8324 (11.4) |
| 5 |
7969 (10.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot