NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,940.4 |
| Mean read quality |
8.5 |
| Median read length |
1,863.0 |
| Median read quality |
9.2 |
| Number of reads |
1,432.0 |
| Read length N50 |
2,338.0 |
| STDEV read length |
956.0 |
| Total bases |
2,778,590.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1432 (100.0%) 2.8Mb |
| >Q7 |
1430 (99.9%) 2.8Mb |
| >Q10 |
309 (21.6%) 0.7Mb |
| >Q12 |
2 (0.1%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.2 (3066) |
| 2 |
12.0 (2806) |
| 3 |
11.8 (3875) |
| 4 |
11.8 (1445) |
| 5 |
11.7 (1742) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8226 (10.8) |
| 2 |
5807 (10.7) |
| 3 |
5568 (10.5) |
| 4 |
5341 (9.1) |
| 5 |
5029 (9.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot