NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,123.7 |
| Mean read quality |
9.6 |
| Median read length |
2,054.0 |
| Median read quality |
10.3 |
| Number of reads |
8,725.0 |
| Read length N50 |
2,386.0 |
| STDEV read length |
871.7 |
| Total bases |
18,529,641.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
8725 (100.0%) 18.5Mb |
| >Q7 |
8724 (100.0%) 18.5Mb |
| >Q10 |
5587 (64.0%) 12.3Mb |
| >Q12 |
40 (0.5%) 0.1Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.6 (2892) |
| 2 |
12.4 (1596) |
| 3 |
12.3 (1768) |
| 4 |
12.3 (1936) |
| 5 |
12.3 (2342) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8524 (10.3) |
| 2 |
8224 (11.4) |
| 3 |
7041 (11.0) |
| 4 |
6826 (11.6) |
| 5 |
6652 (10.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot