NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,044.6 |
| Mean read quality |
9.7 |
| Median read length |
2,005.0 |
| Median read quality |
10.5 |
| Number of reads |
216,344.0 |
| Read length N50 |
2,266.0 |
| STDEV read length |
803.4 |
| Total bases |
442,344,448.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
216344 (100.0%) 442.3Mb |
| >Q7 |
216118 (99.9%) 442.1Mb |
| >Q10 |
141302 (65.3%) 291.0Mb |
| >Q12 |
16686 (7.7%) 31.4Mb |
| >Q15 |
7 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.5 (1086) |
| 2 |
15.5 (141) |
| 3 |
15.3 (121) |
| 4 |
15.2 (111) |
| 5 |
15.2 (245) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10106 (10.2) |
| 2 |
8790 (11.0) |
| 3 |
8745 (8.8) |
| 4 |
8567 (11.3) |
| 5 |
8446 (7.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot