NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,116.3 |
| Mean read quality |
9.6 |
| Median read length |
3,204.5 |
| Median read quality |
10.5 |
| Number of reads |
1,006.0 |
| Read length N50 |
3,450.0 |
| STDEV read length |
957.9 |
| Total bases |
3,134,953.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1006 (100.0%) 3.1Mb |
| >Q7 |
1006 (100.0%) 3.1Mb |
| >Q10 |
679 (67.5%) 2.2Mb |
| >Q12 |
11 (1.1%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.3 (3348) |
| 2 |
12.3 (4425) |
| 3 |
12.2 (3763) |
| 4 |
12.2 (3000) |
| 5 |
12.1 (4431) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6458 (10.5) |
| 2 |
6216 (8.7) |
| 3 |
5715 (10.6) |
| 4 |
5242 (11.6) |
| 5 |
5223 (11.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot