NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,193.5 |
| Mean read quality |
8.8 |
| Median read length |
1,949.0 |
| Median read quality |
9.5 |
| Number of reads |
908.0 |
| Read length N50 |
2,393.0 |
| STDEV read length |
963.7 |
| Total bases |
1,991,704.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
908 (100.0%) 2.0Mb |
| >Q7 |
907 (99.9%) 2.0Mb |
| >Q10 |
283 (31.2%) 0.7Mb |
| >Q12 |
4 (0.4%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.4 (1594) |
| 2 |
12.2 (1870) |
| 3 |
12.0 (3379) |
| 4 |
12.0 (4492) |
| 5 |
12.0 (1255) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8673 (8.5) |
| 2 |
7077 (9.7) |
| 3 |
5260 (10.0) |
| 4 |
5100 (9.9) |
| 5 |
5076 (9.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot