NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,918.5 |
| Mean read quality |
10.1 |
| Median read length |
1,839.0 |
| Median read quality |
11.0 |
| Number of reads |
263,071.0 |
| Read length N50 |
2,100.0 |
| STDEV read length |
807.7 |
| Total bases |
504,709,225.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
263071 (100.0%) 504.7Mb |
| >Q7 |
262826 (99.9%) 504.4Mb |
| >Q10 |
192856 (73.3%) 372.1Mb |
| >Q12 |
58378 (22.2%) 110.9Mb |
| >Q15 |
61 (0.0%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.1 (664) |
| 2 |
16.4 (406) |
| 3 |
16.3 (248) |
| 4 |
16.1 (66) |
| 5 |
15.9 (1308) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10965 (11.9) |
| 2 |
9972 (11.3) |
| 3 |
9903 (8.6) |
| 4 |
9281 (9.5) |
| 5 |
9153 (11.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot