NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,090.9 |
| Mean read quality |
9.6 |
| Median read length |
2,033.0 |
| Median read quality |
10.4 |
| Number of reads |
194,319.0 |
| Read length N50 |
2,260.0 |
| STDEV read length |
768.3 |
| Total bases |
406,306,589.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
194319 (100.0%) 406.3Mb |
| >Q7 |
194297 (100.0%) 406.3Mb |
| >Q10 |
132693 (68.3%) 282.5Mb |
| >Q12 |
252 (0.1%) 0.5Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.7 (2760) |
| 2 |
12.7 (2418) |
| 3 |
12.6 (1492) |
| 4 |
12.6 (1938) |
| 5 |
12.5 (1098) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11065 (10.8) |
| 2 |
10058 (10.9) |
| 3 |
9729 (10.8) |
| 4 |
9477 (9.9) |
| 5 |
9304 (11.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot