NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,128.8 |
| Mean read quality |
8.6 |
| Median read length |
970.0 |
| Median read quality |
9.1 |
| Number of reads |
793,695.0 |
| Read length N50 |
1,253.0 |
| STDEV read length |
643.8 |
| Total bases |
895,884,929.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
793695 (100.0%) 895.9Mb |
| >Q7 |
793327 (100.0%) 895.5Mb |
| >Q10 |
203424 (25.6%) 230.3Mb |
| >Q12 |
3152 (0.4%) 3.4Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.4 (553) |
| 2 |
13.4 (777) |
| 3 |
13.3 (411) |
| 4 |
13.3 (731) |
| 5 |
13.2 (660) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
25029 (10.3) |
| 2 |
15725 (9.5) |
| 3 |
15545 (8.7) |
| 4 |
13781 (10.7) |
| 5 |
12920 (10.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot