NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,533.7 |
| Mean read quality |
12.6 |
| Median read length |
965.0 |
| Median read quality |
13.5 |
| Number of reads |
187,064.0 |
| Read length N50 |
2,450.0 |
| STDEV read length |
1,713.3 |
| Total bases |
286,893,424.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
187064 (100.0%) 286.9Mb |
| >Q7 |
187064 (100.0%) 286.9Mb |
| >Q10 |
187050 (100.0%) 286.9Mb |
| >Q12 |
144189 (77.1%) 214.7Mb |
| >Q15 |
39399 (21.1%) 69.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.8 (809) |
| 2 |
20.3 (2084) |
| 3 |
20.1 (4226) |
| 4 |
19.9 (1285) |
| 5 |
19.9 (937) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
45783 (10.6) |
| 2 |
32366 (10.6) |
| 3 |
32363 (10.7) |
| 4 |
31778 (12.5) |
| 5 |
31630 (10.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot