NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,512.7 |
| Mean read quality |
12.3 |
| Median read length |
751.0 |
| Median read quality |
13.0 |
| Number of reads |
16,439.0 |
| Read length N50 |
3,017.0 |
| STDEV read length |
2,003.7 |
| Total bases |
24,867,709.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
16439 (100.0%) 24.9Mb |
| >Q7 |
16439 (100.0%) 24.9Mb |
| >Q10 |
16439 (100.0%) 24.9Mb |
| >Q12 |
11507 (70.0%) 18.8Mb |
| >Q15 |
2581 (15.7%) 5.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.7 (1658) |
| 2 |
18.9 (1412) |
| 3 |
18.6 (5653) |
| 4 |
18.3 (2011) |
| 5 |
18.3 (1083) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
25653 (14.4) |
| 2 |
24549 (15.0) |
| 3 |
23507 (11.7) |
| 4 |
23408 (10.6) |
| 5 |
22062 (10.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot