NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
338.9 |
| Mean read quality |
10.7 |
| Median read length |
230.0 |
| Median read quality |
11.4 |
| Number of reads |
1,813.0 |
| Read length N50 |
296.0 |
| STDEV read length |
401.7 |
| Total bases |
614,398.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1813 (100.0%) 0.6Mb |
| >Q7 |
1813 (100.0%) 0.6Mb |
| >Q10 |
1492 (82.3%) 0.5Mb |
| >Q12 |
639 (35.2%) 0.2Mb |
| >Q15 |
27 (1.5%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.7 (580) |
| 2 |
16.5 (303) |
| 3 |
16.3 (233) |
| 4 |
15.8 (244) |
| 5 |
15.6 (235) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7223 (10.8) |
| 2 |
5637 (10.0) |
| 3 |
4604 (11.3) |
| 4 |
4378 (11.4) |
| 5 |
4290 (11.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot