NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,741.0 |
| Mean read quality |
12.0 |
| Median read length |
1,116.0 |
| Median read quality |
12.6 |
| Number of reads |
51,444.0 |
| Read length N50 |
2,737.0 |
| STDEV read length |
1,926.5 |
| Total bases |
89,566,133.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
51444 (100.0%) 89.6Mb |
| >Q7 |
51444 (100.0%) 89.6Mb |
| >Q10 |
51360 (99.8%) 89.5Mb |
| >Q12 |
33130 (64.4%) 51.6Mb |
| >Q15 |
5632 (10.9%) 6.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
22.3 (388) |
| 2 |
22.2 (274) |
| 3 |
22.1 (253) |
| 4 |
21.8 (285) |
| 5 |
21.7 (267) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
50907 (11.9) |
| 2 |
38095 (11.6) |
| 3 |
35237 (11.4) |
| 4 |
33850 (11.4) |
| 5 |
33827 (11.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot