NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,374.5 |
| Mean read quality |
12.1 |
| Median read length |
908.0 |
| Median read quality |
12.8 |
| Number of reads |
35,320.0 |
| Read length N50 |
2,032.0 |
| STDEV read length |
1,426.3 |
| Total bases |
48,546,581.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
35320 (100.0%) 48.5Mb |
| >Q7 |
35320 (100.0%) 48.5Mb |
| >Q10 |
35240 (99.8%) 48.5Mb |
| >Q12 |
23403 (66.3%) 29.5Mb |
| >Q15 |
4575 (13.0%) 4.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
24.5 (253) |
| 2 |
24.0 (449) |
| 3 |
24.0 (347) |
| 4 |
22.7 (252) |
| 5 |
22.3 (480) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
29244 (11.5) |
| 2 |
24550 (10.3) |
| 3 |
21735 (10.9) |
| 4 |
20191 (13.8) |
| 5 |
19059 (12.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot