NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,279.1 |
| Mean read quality |
12.5 |
| Median read length |
813.0 |
| Median read quality |
13.2 |
| Number of reads |
36,152.0 |
| Read length N50 |
1,907.0 |
| STDEV read length |
1,384.5 |
| Total bases |
46,242,774.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
36152 (100.0%) 46.2Mb |
| >Q7 |
36152 (100.0%) 46.2Mb |
| >Q10 |
36080 (99.8%) 46.2Mb |
| >Q12 |
26001 (71.9%) 29.9Mb |
| >Q15 |
7937 (22.0%) 7.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
27.1 (346) |
| 2 |
24.5 (493) |
| 3 |
23.5 (310) |
| 4 |
23.2 (345) |
| 5 |
23.2 (252) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
21935 (11.2) |
| 2 |
20327 (10.3) |
| 3 |
19015 (13.2) |
| 4 |
18797 (11.4) |
| 5 |
18551 (11.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot