NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,419.5 |
| Mean read quality |
12.4 |
| Median read length |
881.0 |
| Median read quality |
13.2 |
| Number of reads |
24,772.0 |
| Read length N50 |
2,194.0 |
| STDEV read length |
1,609.2 |
| Total bases |
35,164,950.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
24772 (100.0%) 35.2Mb |
| >Q7 |
24772 (100.0%) 35.2Mb |
| >Q10 |
24739 (99.9%) 35.1Mb |
| >Q12 |
17652 (71.3%) 22.2Mb |
| >Q15 |
5015 (20.2%) 5.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
23.6 (607) |
| 2 |
23.6 (345) |
| 3 |
23.3 (253) |
| 4 |
22.6 (371) |
| 5 |
22.2 (348) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
36707 (11.0) |
| 2 |
27914 (11.7) |
| 3 |
26111 (10.3) |
| 4 |
25669 (13.2) |
| 5 |
22534 (10.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot