NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,109.9 |
| Mean read quality |
12.2 |
| Median read length |
770.0 |
| Median read quality |
12.8 |
| Number of reads |
12,181.0 |
| Read length N50 |
1,549.0 |
| STDEV read length |
1,025.1 |
| Total bases |
13,519,743.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
12181 (100.0%) 13.5Mb |
| >Q7 |
12181 (100.0%) 13.5Mb |
| >Q10 |
12140 (99.7%) 13.5Mb |
| >Q12 |
7982 (65.5%) 8.0Mb |
| >Q15 |
1942 (15.9%) 1.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
23.6 (762) |
| 2 |
23.0 (382) |
| 3 |
22.4 (274) |
| 4 |
22.1 (770) |
| 5 |
21.8 (259) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11125 (10.7) |
| 2 |
10533 (10.2) |
| 3 |
10438 (14.0) |
| 4 |
10058 (11.4) |
| 5 |
9963 (12.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot