NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,473.5 |
| Mean read quality |
11.2 |
| Median read length |
967.0 |
| Median read quality |
12.2 |
| Number of reads |
155,051.0 |
| Read length N50 |
2,244.0 |
| STDEV read length |
1,559.0 |
| Total bases |
228,468,939.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
155051 (100.0%) 228.5Mb |
| >Q7 |
155051 (100.0%) 228.5Mb |
| >Q10 |
135227 (87.2%) 191.2Mb |
| >Q12 |
83803 (54.0%) 113.7Mb |
| >Q15 |
2703 (1.7%) 3.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.5 (851) |
| 2 |
17.5 (568) |
| 3 |
17.4 (589) |
| 4 |
17.3 (1002) |
| 5 |
17.2 (925) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
36305 (11.3) |
| 2 |
28628 (9.2) |
| 3 |
28353 (8.8) |
| 4 |
28333 (11.4) |
| 5 |
28295 (10.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot