NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
892.0 |
| Mean read quality |
10.8 |
| Median read length |
504.0 |
| Median read quality |
11.6 |
| Number of reads |
11,384.0 |
| Read length N50 |
1,449.0 |
| STDEV read length |
1,115.7 |
| Total bases |
10,154,598.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
11384 (100.0%) 10.2Mb |
| >Q7 |
11384 (100.0%) 10.2Mb |
| >Q10 |
9495 (83.4%) 8.6Mb |
| >Q12 |
4492 (39.5%) 4.5Mb |
| >Q15 |
80 (0.7%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.7 (774) |
| 2 |
16.4 (480) |
| 3 |
16.3 (577) |
| 4 |
16.3 (374) |
| 5 |
16.2 (618) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
20093 (10.3) |
| 2 |
17301 (10.4) |
| 3 |
16786 (10.1) |
| 4 |
13812 (8.7) |
| 5 |
13629 (12.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot