NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
684.6 |
| Mean read quality |
12.0 |
| Median read length |
353.0 |
| Median read quality |
12.6 |
| Number of reads |
7,751.0 |
| Read length N50 |
1,176.0 |
| STDEV read length |
836.4 |
| Total bases |
5,306,486.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
7751 (100.0%) 5.3Mb |
| >Q7 |
7751 (100.0%) 5.3Mb |
| >Q10 |
7751 (100.0%) 5.3Mb |
| >Q12 |
4793 (61.8%) 3.7Mb |
| >Q15 |
1031 (13.3%) 1.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.9 (2499) |
| 2 |
19.5 (826) |
| 3 |
19.4 (1773) |
| 4 |
19.3 (2002) |
| 5 |
19.2 (2211) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
12511 (10.4) |
| 2 |
9939 (11.1) |
| 3 |
9658 (16.7) |
| 4 |
9287 (14.9) |
| 5 |
9012 (14.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot