NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,178.8 |
| Mean read quality |
11.2 |
| Median read length |
775.0 |
| Median read quality |
12.1 |
| Number of reads |
181,976.0 |
| Read length N50 |
1,732.0 |
| STDEV read length |
1,259.0 |
| Total bases |
214,515,682.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
181976 (100.0%) 214.5Mb |
| >Q7 |
181976 (100.0%) 214.5Mb |
| >Q10 |
159486 (87.6%) 181.6Mb |
| >Q12 |
95853 (52.7%) 109.9Mb |
| >Q15 |
1764 (1.0%) 1.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.8 (360) |
| 2 |
17.3 (377) |
| 3 |
17.3 (259) |
| 4 |
17.1 (594) |
| 5 |
17.1 (1273) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
34880 (12.2) |
| 2 |
28519 (9.4) |
| 3 |
27199 (10.8) |
| 4 |
26664 (10.0) |
| 5 |
26241 (10.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot