NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,553.3 |
| Mean read quality |
11.3 |
| Median read length |
1,009.0 |
| Median read quality |
12.2 |
| Number of reads |
234,041.0 |
| Read length N50 |
2,389.0 |
| STDEV read length |
1,685.1 |
| Total bases |
363,526,414.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
234041 (100.0%) 363.5Mb |
| >Q7 |
234041 (100.0%) 363.5Mb |
| >Q10 |
204780 (87.5%) 305.3Mb |
| >Q12 |
128610 (55.0%) 187.3Mb |
| >Q15 |
4846 (2.1%) 7.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.6 (1141) |
| 2 |
18.4 (1191) |
| 3 |
18.3 (312) |
| 4 |
17.9 (621) |
| 5 |
17.8 (3645) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
36009 (10.2) |
| 2 |
34355 (11.1) |
| 3 |
33947 (14.0) |
| 4 |
33711 (9.5) |
| 5 |
33335 (9.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot