NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,504.1 |
| Mean read quality |
12.1 |
| Median read length |
897.0 |
| Median read quality |
13.1 |
| Number of reads |
128,115.0 |
| Read length N50 |
2,513.0 |
| STDEV read length |
1,790.7 |
| Total bases |
192,701,768.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
128115 (100.0%) 192.7Mb |
| >Q7 |
128115 (100.0%) 192.7Mb |
| >Q10 |
119502 (93.3%) 176.0Mb |
| >Q12 |
87483 (68.3%) 123.2Mb |
| >Q15 |
21746 (17.0%) 35.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.7 (1230) |
| 2 |
20.4 (2698) |
| 3 |
20.3 (570) |
| 4 |
20.2 (1156) |
| 5 |
20.0 (612) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
41279 (10.6) |
| 2 |
40489 (12.5) |
| 3 |
38392 (10.6) |
| 4 |
35681 (11.5) |
| 5 |
33778 (9.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot