NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,352.6 |
| Mean read quality |
12.2 |
| Median read length |
778.0 |
| Median read quality |
13.1 |
| Number of reads |
42,332.0 |
| Read length N50 |
2,287.0 |
| STDEV read length |
1,699.4 |
| Total bases |
57,259,118.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
42332 (100.0%) 57.3Mb |
| >Q7 |
42332 (100.0%) 57.3Mb |
| >Q10 |
39663 (93.7%) 52.5Mb |
| >Q12 |
28943 (68.4%) 35.5Mb |
| >Q15 |
8956 (21.2%) 11.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.5 (781) |
| 2 |
20.4 (2710) |
| 3 |
20.3 (512) |
| 4 |
20.1 (899) |
| 5 |
20.0 (1013) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
39739 (9.3) |
| 2 |
38981 (10.8) |
| 3 |
32871 (12.5) |
| 4 |
31924 (10.3) |
| 5 |
31159 (10.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot