NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,309.5 |
| Mean read quality |
12.3 |
| Median read length |
784.0 |
| Median read quality |
13.3 |
| Number of reads |
70,470.0 |
| Read length N50 |
2,117.0 |
| STDEV read length |
1,558.5 |
| Total bases |
92,280,691.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
70470 (100.0%) 92.3Mb |
| >Q7 |
70470 (100.0%) 92.3Mb |
| >Q10 |
65845 (93.4%) 84.2Mb |
| >Q12 |
48807 (69.3%) 58.4Mb |
| >Q15 |
16633 (23.6%) 22.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
21.8 (1511) |
| 2 |
20.8 (2380) |
| 3 |
20.5 (1246) |
| 4 |
20.3 (907) |
| 5 |
20.3 (960) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
44907 (9.4) |
| 2 |
36603 (10.5) |
| 3 |
28340 (10.7) |
| 4 |
26453 (10.9) |
| 5 |
23738 (11.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot