NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
999.0 |
| Mean read quality |
12.1 |
| Median read length |
623.0 |
| Median read quality |
13.1 |
| Number of reads |
37,094.0 |
| Read length N50 |
1,546.0 |
| STDEV read length |
1,084.0 |
| Total bases |
37,057,065.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
37094 (100.0%) 37.1Mb |
| >Q7 |
37094 (100.0%) 37.1Mb |
| >Q10 |
34649 (93.4%) 34.1Mb |
| >Q12 |
25011 (67.4%) 23.5Mb |
| >Q15 |
7173 (19.3%) 7.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.4 (876) |
| 2 |
20.4 (698) |
| 3 |
20.2 (510) |
| 4 |
20.1 (1029) |
| 5 |
20.0 (1396) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
19554 (10.7) |
| 2 |
16005 (11.1) |
| 3 |
15691 (10.8) |
| 4 |
13396 (13.6) |
| 5 |
12955 (12.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot