NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,221.1 |
| Mean read quality |
12.2 |
| Median read length |
724.0 |
| Median read quality |
13.1 |
| Number of reads |
60,945.0 |
| Read length N50 |
1,989.0 |
| STDEV read length |
1,478.7 |
| Total bases |
74,419,089.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
60945 (100.0%) 74.4Mb |
| >Q7 |
60945 (100.0%) 74.4Mb |
| >Q10 |
57231 (93.9%) 68.3Mb |
| >Q12 |
41916 (68.8%) 47.8Mb |
| >Q15 |
12048 (19.8%) 15.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.3 (1163) |
| 2 |
20.2 (681) |
| 3 |
20.2 (2403) |
| 4 |
20.1 (3882) |
| 5 |
20.0 (1418) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
56414 (10.2) |
| 2 |
30494 (10.7) |
| 3 |
28473 (9.7) |
| 4 |
26270 (10.3) |
| 5 |
24990 (9.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot