NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,741.2 |
| Mean read quality |
12.7 |
| Median read length |
1,117.0 |
| Median read quality |
13.7 |
| Number of reads |
382,124.0 |
| Read length N50 |
2,756.0 |
| STDEV read length |
1,891.7 |
| Total bases |
665,361,262.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
382122 (100.0%) 665.4Mb |
| >Q7 |
382096 (100.0%) 665.3Mb |
| >Q10 |
369616 (96.7%) 642.4Mb |
| >Q12 |
297386 (77.8%) 501.4Mb |
| >Q15 |
97035 (25.4%) 180.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
22.2 (313) |
| 2 |
22.1 (410) |
| 3 |
22.0 (1820) |
| 4 |
21.7 (1223) |
| 5 |
21.6 (1288) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
49313 (10.4) |
| 2 |
46010 (11.7) |
| 3 |
44910 (12.0) |
| 4 |
44668 (11.3) |
| 5 |
44222 (12.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot