NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
339.5 |
| Mean read quality |
11.0 |
| Median read length |
232.0 |
| Median read quality |
11.7 |
| Number of reads |
3,037.0 |
| Read length N50 |
288.0 |
| STDEV read length |
434.5 |
| Total bases |
1,031,101.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
3037 (100.0%) 1.0Mb |
| >Q7 |
3031 (99.8%) 1.0Mb |
| >Q10 |
2642 (87.0%) 0.9Mb |
| >Q12 |
1334 (43.9%) 0.5Mb |
| >Q15 |
133 (4.4%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.9 (447) |
| 2 |
17.8 (433) |
| 3 |
17.8 (281) |
| 4 |
17.8 (378) |
| 5 |
17.8 (210) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10404 (11.7) |
| 2 |
8071 (15.8) |
| 3 |
6359 (12.2) |
| 4 |
6066 (13.3) |
| 5 |
5284 (17.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot