NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,108.0 |
| Mean read quality |
12.6 |
| Median read length |
1,269.0 |
| Median read quality |
13.7 |
| Number of reads |
268,359.0 |
| Read length N50 |
3,568.0 |
| STDEV read length |
2,506.0 |
| Total bases |
565,704,275.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
268358 (100.0%) 565.7Mb |
| >Q7 |
268348 (100.0%) 565.7Mb |
| >Q10 |
258231 (96.2%) 542.5Mb |
| >Q12 |
208879 (77.8%) 436.0Mb |
| >Q15 |
62243 (23.2%) 155.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.5 (394) |
| 2 |
20.5 (1022) |
| 3 |
20.2 (2034) |
| 4 |
20.1 (1084) |
| 5 |
19.9 (819) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
48950 (11.8) |
| 2 |
48166 (12.1) |
| 3 |
47481 (9.4) |
| 4 |
47365 (13.7) |
| 5 |
43584 (12.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot